Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
20
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
98
DNA binding
22
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
20
June, 2019
17
July, 2019
13
November, 2017
10
May, 2019
November, 2018
1
February, 2023
1
October, 2017
Available data
132
bigWig
128
bam
114
bed narrowPeak
41
bigBed narrowPeak
36
tagAlign
31
bed broadPeak
26
bigBed broadPeak
23
bed bed3+
12
tsv
10
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
137
Homo sapiens
Biosample type
116
tissue
21
primary cell
Organ
582
pancreas
572
connective tissue
546
liver
425
adipose tissue
269
epithelium
151
heart
137
brain
122
vasculature
116
blood vessel
114
kidney
79
artery
70
bone element
62
limb
57
musculature of body
43
blood
43
bodily fluid
34
eye
25
embryo
18
ureter
15
nerve
12
skeleton
10
vein
6
spleen
2
pericardium
1
pituitary gland
Project
137
AMP
Genome assembly (visualization)
154
GRCh38
137
hg19
Lab
137
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
November, 2018
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
137 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
3
12
1
1
1
angular gyrus
7
temporal lobe
5
1
1
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download