Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
159
total RNA-seq
23
ATAC-seq
5
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
1
pCHi-C
Assay category
406
DNA binding
162
Transcription
28
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
329
transcription factor
83
histone modification
82
histone
78
recombinant protein
55
RNA binding protein
52
narrow histone mark
30
broad histone mark
chromatin remodeller
14
control
2
other context
2
other post-translational modification
Date released
251
November, 2017
170
May, 2020
47
December, 2017
44
November, 2018
20
August, 2017
20
May, 2022
18
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
June, 2019
2
March, 2020
Available data
594
bigWig
562
bam
414
bed narrowPeak
367
fastq
331
bigBed narrowPeak
162
tsv
59
bed broadPeak
59
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
602
Homo sapiens
Biosample type
310
cell line
266
tissue
13
in vitro differentiated cells
13
primary cell
Organ
655
pancreas
602
liver
587
connective tissue
426
adipose tissue
307
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
45
blood
45
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
602
AMP
Genome assembly (visualization)
602
hg19
510
GRCh38
Lab
567
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
16
inconsistent control read length
month_released!
October, 2022
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
602 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
cell line
HepG2
302
5
1
1
1
tissue
liver
81
147
20
2
1
1
1
right lobe of liver
7
2
1
1
2
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
Download