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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 173ChIP-seq
  • 89total RNA-seq
  • 5ATAC-seq
  • 4DNase-seq
  • 4RRBS
  • 1FAIRE-seq
Assay category
  • 173DNA binding
  • 89Transcription
  • 10DNA accessibility
  • 4DNA methylation
Target of assay
  • 123histone modification
  • 122histone
  • 61broad histone mark
  • 60narrow histone mark
  • 47transcription factor
  • 8RNA binding protein
  • 3chromatin remodeller
  • 3control
Date released
  • 574February, 2021
  • 316May, 2021
  • 281November, 2017
  • 276August, 2017
  • 260May, 2020
  • 217October, 2019
  • 187June, 2019
  • 164July, 2018
  • 97May, 2019
  • 91July, 2019
  • 77December, 2017
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 60August, 2021
  • 59November, 2019
  • 49April, 2018
  • 47October, 2018
  • 45February, 2023
  • 39May, 2022
  • 32March, 2020
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 270bigWig
  • 255fastq
  • 252bam
  • 142bed narrowPeak
  • 89tsv
  • 42bigBed narrowPeak
  • 41bed broadPeak
  • 38tagAlign
  • 33bed bed3+
  • 15bigBed broadPeak
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 270Homo sapiens
Biosample type
  • 180tissue
  • 49in vitro differentiated cells
  • 47primary cell
Organ
  • 159pancreas
  • 64connective tissue
  • 20liver
  • 17epithelium
  • 15adipose tissue
  • 15musculature of body
Project
  • 276AMP
Genome assembly (visualization)
  • 276hg19
  • 249GRCh38
Lab
  • 276AMP-T2D consortium
Audit category:
  • 39missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

276 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans278911
liver181
skeletal muscle tissue132
pancreas12
white adipose tissue12
in vitro differentiated cells
adipocyte481
primary cell
skeletal muscle myoblast1521
pancreatic endocrine cell12
pancreatic alpha cell71
pancreatic beta cell71
pancreatic acinar cell1
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