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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
19
ATAC-seq
15
total RNA-seq
2
Capture-C
2
Hi-C
Assay category
35
DNA binding
19
DNA accessibility
15
Transcription
2
3D chromatin structure
Target of assay
24
histone
24
histone modification
12
broad histone mark
12
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
574
February, 2021
316
May, 2021
276
August, 2017
260
May, 2020
216
November, 2017
210
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
65
April, 2019
60
August, 2021
59
November, 2019
58
November, 2018
49
April, 2018
47
October, 2018
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
59
bigWig
53
bed narrowPeak
52
bam
21
tagAlign
15
tsv
13
fastq
6
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
2
hic
1
bedpe bed3+
Organism
73
Homo sapiens
Biosample type
33
in vitro differentiated cells
23
cell line
14
tissue
3
primary cell
Organ
18
liver
8
embryo
6
brain
5
connective tissue
5
pancreas
3
epithelium
1
adipose tissue
1
kidney
1
spleen
Project
73
AMP
Genome assembly (visualization)
119
GRCh38
73
hg19
Lab
52
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
3
missing controlled_by
month_released!
February, 2023
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
ATAC-seq
total RNA-seq
Capture-C
Hi-C
in vitro differentiated cells
neural progenitor cell
12
10
7
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
14
1
H1-hESC
8
tissue
brain
6
body of pancreas
4
islet of Langerhans
1
kidney
1
omental fat pad
1
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primary cell
hepatocyte
3
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