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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
total RNA-seq
123
ChIP-seq
21
ATAC-seq
1
DNase-seq
1
Hi-C
Assay category
179
Transcription
123
DNA binding
22
DNA accessibility
1
3D chromatin structure
Target of assay
116
histone
116
histone modification
64
broad histone mark
52
narrow histone mark
4
transcription factor
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
308
bigWig
282
bam
177
tsv
135
bed narrowPeak
89
tagAlign
3
bed bed3+
1
bed broadPeak
1
bedpe
1
bigBed broadPeak
1
bigBed narrowPeak
1
hic
Organism
325
Homo sapiens
Biosample type
190
primary cell
89
in vitro differentiated cells
41
tissue
5
cell line
Organ
46
pancreas
9
epithelium
7
connective tissue
3
heart
2
embryo
Project
189
AMP
136
T1D
Genome assembly (visualization)
325
hg19
284
GRCh38
Lab
175
Kyle Gaulton, UCSD
147
AMP-T2D consortium
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
73
inconsistent ontology term
BIOSAMPLE
ASSAY
325 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
primary cell
monocyte
51
84
13
CD8-positive, alpha-beta T cell
2
33
osteoblast
4
1
1
embryonic stem cell
1
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
embryonic stem cell
5
pancreatic PP cell
2
cardiac fibroblast
1
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tissue
islet of Langerhans
36
2
1
cardiac atrium
1
cardiac ventricle
1
cell line
EndoC_BH1
4
1
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