Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ATAC-seq
13
total RNA-seq
10
Hi-C
2
pCHi-C
1
snATAC-seq
Assay category
43
DNA accessibility
13
Transcription
10
3D chromatin structure
Target of assay
3
histone
histone modification
3
narrow histone mark
Date released
574
February, 2021
257
November, 2017
233
May, 2020
200
May, 2021
168
June, 2019
164
July, 2018
153
August, 2017
91
July, 2019
71
November, 2018
49
April, 2018
49
November, 2019
47
December, 2017
46
October, 2019
45
February, 2023
42
August, 2021
40
September, 2018
39
May, 2022
30
December, 2018
29
March, 2020
19
January, 2019
17
October, 2018
15
February, 2018
7
October, 2017
7
September, 2017
6
November, 2020
5
April, 2019
5
December, 2019
5
May, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
38
bed narrowPeak
37
bigWig
31
bam
18
fastq
15
tsv
12
bedpe bed3+
10
hic
2
ibed
1
bed bed3+
1
txt
Organism
68
Homo sapiens
Biosample type
55
tissue
6
cell line
6
in vitro differentiated cells
1
primary cell
Organ
26
pancreas
22
liver
5
epithelium
5
musculature of body
4
heart
3
blood vessel
3
vasculature
1
vein
Project
66
AMP
2
T1D
Genome assembly (visualization)
68
hg19
13
GRCh38
Lab
30
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
10
inconsistent ontology term
1
audit script error
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
68 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
snATAC-seq
tissue
liver
20
1
1
islet of Langerhans
20
psoas muscle
2
2
aorta
1
1
heart left ventricle
1
1
+ See 3 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
1
lymphocyte of B lineage (iPSC)
1
1
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
Download