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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
total RNA-seq
11
ATAC-seq
10
Hi-C
9
ChIP-seq
2
pCHi-C
Assay category
13
Transcription
11
DNA accessibility
10
3D chromatin structure
9
DNA binding
Target of assay
9
histone
9
histone modification
5
broad histone mark
4
narrow histone mark
Date released
574
February, 2021
316
May, 2021
268
August, 2017
260
May, 2020
247
November, 2017
217
October, 2019
183
June, 2019
164
July, 2018
92
May, 2019
91
July, 2019
73
December, 2017
72
September, 2018
62
April, 2019
59
August, 2021
58
November, 2019
50
November, 2018
49
April, 2018
45
February, 2023
39
May, 2022
36
October, 2018
32
March, 2020
31
February, 2018
28
December, 2018
20
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
33
bigWig
28
bam
15
bed narrowPeak
15
tsv
13
fastq
12
bedpe bed3+
10
hic
6
bigBed narrowPeak
6
tagAlign
4
bed broadPeak
2
ibed
Organism
45
Homo sapiens
Biosample type
31
tissue
7
cell line
6
in vitro differentiated cells
1
primary cell
Organ
16
pancreas
6
brain
6
epithelium
4
heart
4
musculature of body
3
blood vessel
3
vasculature
2
liver
1
adipose tissue
1
connective tissue
1
spleen
1
vein
Project
40
AMP
5
T1D
Genome assembly (visualization)
45
hg19
30
GRCh38
Lab
44
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
11
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
45 results
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total RNA-seq
ATAC-seq
Hi-C
ChIP-seq
pCHi-C
tissue
brain
6
islet of Langerhans
3
2
body of pancreas
4
psoas muscle
2
2
aorta
1
1
+ See 6 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
1
lymphocyte of B lineage (iPSC)
1
1
1
primary cell
endothelial cell of umbilical vein
1
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