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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
52
ATAC-seq
26
total RNA-seq
1
snATAC-seq
Assay category
75
DNA binding
53
DNA accessibility
26
Transcription
Target of assay
transcription factor
65
recombinant protein
56
histone
56
histone modification
34
RNA binding protein
29
narrow histone mark
27
broad histone mark
16
control
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
569
February, 2021
312
May, 2021
260
May, 2020
229
August, 2017
210
October, 2019
183
June, 2019
164
July, 2018
92
May, 2019
91
July, 2019
72
September, 2018
60
April, 2019
58
November, 2019
49
April, 2018
49
August, 2021
45
February, 2023
43
November, 2017
39
May, 2022
35
December, 2017
32
March, 2020
32
October, 2018
31
February, 2018
13
October, 2017
12
January, 2019
10
November, 2018
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
2
December, 2018
1
May, 2023
Available data
135
bigWig
132
bam
127
fastq
109
bed narrowPeak
38
bigBed narrowPeak
26
tsv
23
bed broadPeak
18
tagAlign
17
bigBed broadPeak
1
bed bed3+
1
txt
Organism
154
Homo sapiens
Biosample type
78
primary cell
45
tissue
31
cell line
Organ
90
pancreas
65
epithelium
51
liver
12
brain
4
vasculature
2
blood vessel
1
musculature of body
Project
154
AMP
Genome assembly (visualization)
154
hg19
148
GRCh38
Lab
116
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
154 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
4
10
pancreatic acinar cell
8
3
2
pancreatic alpha cell
3
10
pancreatic endocrine cell
11
+ See 3 more…
tissue
liver
20
islet of Langerhans
18
cingulate gyrus
2
middle frontal area 46
2
caudate nucleus
1
+ See 2 more…
cell line
HepG2
31
See all biosamples
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