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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 178ChIP-seq
  • 16total RNA-seq
  • 9ATAC-seq
  • 8DNase-seq
  • 5Hi-C
  • 1FAIRE-seq
Assay category
  • 178DNA binding
  • 18DNA accessibility
  • 16Transcription
  • 53D chromatin structure
Target of assay
  • 171histone
  • 171histone modification
  • 119narrow histone mark
  • 52broad histone mark
  • 7recombinant protein
  • 7transcription factor
Date released
  • 574February, 2021
  • 316May, 2021
  • 281November, 2017
  • 276August, 2017
  • 260May, 2020
  • 217October, 2019
  • 187June, 2019
  • 164July, 2018
  • 97May, 2019
  • 91July, 2019
  • 77December, 2017
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 60August, 2021
  • 59November, 2019
  • 49April, 2018
  • 47October, 2018
  • 45February, 2023
  • 39May, 2022
  • 32March, 2020
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 207bam
  • 207bigWig
  • 189bed narrowPeak
  • 70bigBed narrowPeak
  • 40tagAlign
  • 16tsv
  • 9bed broadPeak
  • 9bigBed broadPeak
  • 8bed bed3+
  • 4hic
  • 3bedpe bed3+
  • 1hdf5
  • 1tagAlign bed3+
  • 1tar
Organism
  • 217Homo sapiens
Biosample type
  • 163tissue
  • 26primary cell
  • 20cell line
  • 8in vitro differentiated cells
Organ
  • 78brain
  • 52limb
  • 37blood vessel
  • 37vasculature
  • 31nerve
  • 27epithelium
  • 22kidney
  • 21artery
  • 16vein
  • 8heart
  • 8pancreas
  • 7liver
  • 3connective tissue
  • 1adipose tissue
  • 1pituitary gland
Project
  • 217AMP
Genome assembly (visualization)
  • 217hg19
  • 207GRCh38
Lab
  • 217AMP-T2D consortium
Audit category:
  • 20inconsistent ontology term
  • 1audit script error
Audit category:
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

217 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
tibial nerve24412
tibial artery1812
heart521
brain51
liver51
primary cell
endothelial cell of umbilical vein12211
epithelial cell of proximal tubule6
Heart fetal (cardiac muscle cell)1
Liver fetal (hepatocyte)1
kidney glomerular epithelial cell1
cell line
Panc1611
RCC 7860 HIF1a re-expression31
RCC 7860 HIF2a over-expression21
RCC 7860 vector21
glomerular visceral epithelial cell11
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)111
cardiomyocytes (cardiac muscle cell)111
adipocyte2
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