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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1229ChIP-seq
  • 811total RNA-seq
  • 236ATAC-seq
  • 178DNase-seq
  • 102single cell RNA-seq
  • 26Hi-C
  • 18RRBS
  • 15small RNA-seq
  • 5FAIRE-seq
  • 3pCHi-C
  • 1snATAC-seq
Assay category
  • 1229DNA binding
  • 928Transcription
  • 420DNA accessibility
  • 263D chromatin structure
  • 18DNA methylation
Target of assay
  • 749histone modification
  • 748histone
  • 447transcription factor
  • 393narrow histone mark
  • 355broad histone mark
  • 90RNA binding protein
  • 85recombinant protein
  • 34chromatin remodeller
  • 31control
  • 5other context
  • 5other post-translational modification
Date released
  • 315May, 2021
  • 281November, 2017
  • 260May, 2020
  • 214October, 2019
  • 212August, 2017
  • 173June, 2019
  • 162July, 2018
  • 119February, 2021
  • 97May, 2019
  • 77December, 2017
  • 73July, 2019
  • 72September, 2018
  • 70November, 2018
  • 65April, 2019
  • 58November, 2019
  • 56August, 2021
  • 47April, 2018
  • 42October, 2018
  • 39May, 2022
  • 35February, 2023
  • 32March, 2020
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 12October, 2017
  • 7September, 2017
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 2January, 2018
Available data
  • 2449bigWig
  • 2435bam
  • 1524bed narrowPeak
  • 936bigBed narrowPeak
  • 935fastq
  • 928tsv
  • 289bed broadPeak
  • 254bigBed broadPeak
  • 237tagAlign
  • 224bed bed3+
  • 22hic
  • 21bedpe bed3+
  • 18bed bedMethyl
  • 18bigBed bedMethyl
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 4txt
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2618Homo sapiens
Biosample type
  • 1273tissue
  • 594primary cell
  • 530cell line
  • 224in vitro differentiated cells
  • 3stem cell
Organ
  • 658pancreas
  • 625liver
  • connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 2435AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2624hg19
  • 2562GRCh38
  • 5hg18
Lab
  • 2340AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 3Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 200inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 69missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

2624 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans312604216211
liver83147202111
heart left ventricle2932311
body of pancreas262422
kidney2013111
primary cell
monocyte845315
CD8-positive, alpha-beta T cell3342
pancreatic beta cell7107121
pancreatic alpha cell7106121
pancreatic ductal cell134410
cell line
HepG23225111
smooth muscle cell of the coronary artery4528
GM12878541
EndoC_BH1133331
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
hepatocyte14
stem cell
hESC3
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