Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1231ChIP-seq
  • 1210total RNA-seq
  • 249ATAC-seq
  • 159DNase-seq
  • 106single cell RNA-seq
  • 24Hi-C
  • 17RRBS
  • 17small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1333Transcription
  • 1231DNA binding
  • 414DNA accessibility
  • 243D chromatin structure
  • 17DNA methylation
Target of assay
  • 722histone modification
  • 721histone
  • 475transcription factor
  • 386narrow histone mark
  • 334broad histone mark
  • 94RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 510February, 2021
  • 313May, 2021
  • 281November, 2017
  • 276August, 2017
  • 260May, 2020
  • 209October, 2019
  • 164July, 2018
  • 157June, 2019
  • 82May, 2019
  • 77December, 2017
  • 74July, 2019
  • 72September, 2018
  • 71November, 2018
  • 60August, 2021
  • 59November, 2019
  • 49April, 2018
  • 47October, 2018
  • 45February, 2023
  • 39May, 2022
  • 31February, 2018
  • 30December, 2018
  • 28March, 2020
  • 26January, 2019
  • 18April, 2019
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2841bigWig
  • 2816bam
  • 1485bed narrowPeak
  • 1332tsv
  • 1008fastq
  • 872bigBed narrowPeak
  • 271bed broadPeak
  • 235bigBed broadPeak
  • 234tagAlign
  • 223bed bed3+
  • 19hic
  • 18bedpe bed3+
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 3019Homo sapiens
Biosample type
  • 1642tissue
  • 618primary cell
  • 466cell line
  • 296in vitro differentiated cells
  • 3stem cell
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 2836AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 3025hg19
  • 2862GRCh38
  • 5hg18
Lab
  • 2737AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 209inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
organ_slims!
  • heart
BIOSAMPLE
ASSAY

3025 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue13823
islet of Langerhans312604216211
liver83147202111
bone tissue58
body of pancreas262422
primary cell
monocyte845315
CD8-positive, alpha-beta T cell3342
pancreatic beta cell7107121
pancreatic alpha cell7106121
pancreatic ductal cell134410
cell line
HepG23225111
GM12878541
EndoC_BH1133331
H1-hESC8
Panc1611
in vitro differentiated cells
adipocyte484811
cardiomyocytes359
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
stem cell
hESC3
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego