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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1120total RNA-seq
  • 876ChIP-seq
  • 238ATAC-seq
  • 181DNase-seq
  • 106single cell RNA-seq
  • 24Hi-C
  • 17RRBS
  • 15small RNA-seq
  • 5FAIRE-seq
  • 3pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1241Transcription
  • 876DNA binding
  • 425DNA accessibility
  • 243D chromatin structure
  • 17DNA methylation
Target of assay
  • 701histone
  • 701histone modification
  • 359narrow histone mark
  • 341broad histone mark
  • 158transcription factor
  • 45RNA binding protein
  • 18control
  • 13chromatin remodeller
  • 7recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • 572February, 2021
  • 316May, 2021
  • 256August, 2017
  • 210October, 2019
  • 185June, 2019
  • 164July, 2018
  • 97May, 2019
  • 90May, 2020
  • 82July, 2019
  • 72September, 2018
  • 65April, 2019
  • 59November, 2019
  • 49April, 2018
  • 47October, 2018
  • 45February, 2023
  • 42August, 2021
  • 31February, 2018
  • 30December, 2018
  • 30March, 2020
  • 27December, 2017
  • 22November, 2018
  • 21January, 2019
  • 19May, 2022
  • 15November, 2017
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2413bam
  • 2399bigWig
  • 1240tsv
  • 1161bed narrowPeak
  • 618fastq
  • 609bigBed narrowPeak
  • 237bed bed3+
  • 235bed broadPeak
  • 199bigBed broadPeak
  • 196tagAlign
  • 20hic
  • 19bedpe bed3+
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 11bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2582Homo sapiens
Biosample type
  • 1487tissue
  • 615primary cell
  • 283in vitro differentiated cells
  • 200cell line
  • 3stem cell
Organ
  • 658pancreas
  • liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 2399AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2597GRCh38
  • 2588hg19
  • 5hg18
Lab
  • 2335AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 213inconsistent ontology term
  • 5audit script error
  • 1inconsistent control
Audit category:
  • 74missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 4inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

2588 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue38213
islet of Langerhans260314216211
bone tissue58
heart left ventricle3292311
body of pancreas226422
primary cell
monocyte538415
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1077121
pancreatic alpha cell1076121
pancreatic ductal cell413410
in vitro differentiated cells
adipocyte448811
cardiomyocytes593
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm413
cell line
smooth muscle cell of the coronary artery5248
GM12878541
EndoC_BH1331331
H1-hESC8
Panc1611
stem cell
hESC3
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