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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1142ChIP-seq
  • 955total RNA-seq
  • 190ATAC-seq
  • 180DNase-seq
  • 26single cell RNA-seq
  • 19Hi-C
  • 17RRBS
  • 16small RNA-seq
  • 4pCHi-C
  • 3FAIRE-seq
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1142DNA binding
  • 997Transcription
  • 374DNA accessibility
  • 193D chromatin structure
  • 17DNA methylation
Target of assay
  • 642histone modification
  • 641histone
  • 468transcription factor
  • 342narrow histone mark
  • 298broad histone mark
  • 91RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 30control
  • 5other context
  • 5other post-translational modification
Date released
  • 548February, 2021
  • 281November, 2017
  • 273May, 2021
  • 260May, 2020
  • 209October, 2019
  • 185June, 2019
  • 117August, 2017
  • 96May, 2019
  • 85July, 2019
  • 77December, 2017
  • 68November, 2018
  • 65April, 2019
  • 60August, 2021
  • 45February, 2023
  • 31February, 2018
  • 30December, 2018
  • 26January, 2019
  • 21March, 2020
  • 21May, 2022
  • 11July, 2018
  • 10April, 2018
  • 8October, 2017
  • 6November, 2019
  • 6November, 2020
  • 5December, 2019
  • 5October, 2018
  • 3January, 2018
  • 2June, 2018
  • 1May, 2023
Available data
  • 2409bigWig
  • 2363bam
  • 1386bed narrowPeak
  • 994tsv
  • 874bigBed narrowPeak
  • 645fastq
  • 280bed broadPeak
  • 257bigBed broadPeak
  • 224tagAlign
  • 223bed bed3+
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 15bedpe bed3+
  • 15hic
  • 12bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 4txt
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 2555Homo sapiens
Biosample type
  • 1342tissue
  • 472cell line
  • 443primary cell
  • 295in vitro differentiated cells
  • 3stem cell
Organ
  • pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 2375AMP
  • 180T1D
Genome assembly (visualization)
  • 2555hg19
  • 2493GRCh38
  • 5hg18
Lab
  • 2292AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
Audit category:
  • 159inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 32missing controlled_by
Audit category:
  • 47inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
organ_slims!
  • pancreas
BIOSAMPLE
ASSAY

2555 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
FAIRE-seq
Capture-C
snATAC-seq
tissue
adipose tissue13823
liver83147202111
bone tissue58
heart left ventricle2932311
kidney2013111
cell line
HepG23225111
smooth muscle cell of the coronary artery4528
GM12878541
H1-hESC8
RCC 7860 HIF1a re-expression31
primary cell
monocyte845315
CD8-positive, alpha-beta T cell3342
skeletal muscle myoblast15121
endothelial cell of umbilical vein12221
epithelial cell of proximal tubule8111
in vitro differentiated cells
adipocyte484811
cardiomyocytes359
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
stem cell
hESC3
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