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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 396total RNA-seq
  • 19ChIP-seq
  • 6ATAC-seq
  • 3small RNA-seq
  • 2DNase-seq
Assay category
  • 399Transcription
  • 19DNA binding
  • 8DNA accessibility
Target of assay
  • 17transcription factor
  • 5RNA binding protein
  • 2histone
  • 2histone modification
  • 2narrow histone mark
Date released
  • 386February, 2021
  • 15August, 2017
  • 12July, 2019
  • 5October, 2018
  • 1February, 2023
  • 1January, 2018
  • 1June, 2019
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
  • 1October, 2019
Available data
  • 423bigWig
  • 421bam
  • 398tsv
  • 21fastq
  • 13bed narrowPeak
  • 10bigBed narrowPeak
  • 6bed bed3+
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 1tagAlign
Organism
  • 426Homo sapiens
Biosample type
  • 424tissue
  • 2primary cell
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 426AMP
Genome assembly (visualization)
  • 426hg19
  • 424GRCh38
Lab
  • 426AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 12missing controlled_by
BIOSAMPLE
ASSAY

426 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue38213
white adipose tissue12
omental fat pad43112
subcutaneous adipose tissue6211
visceral abdominal adipose tissue3
primary cell
mesenchymal stem cell of adipose11
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