Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
114
candidate regulatory elements
102
target gene predictions
98
accessible chromatin
66
chromatin state
31
binding sites
25
histone modifications
18
variant allelic effects
12
eQTL
9
Fine-mapped variants
2
gene expression
2
pQTL
1
caQTL
Date released
171
September, 2022
104
February, 2021
60
November, 2021
22
June, 2020
17
February, 2024
15
May, 2021
13
March, 2020
12
May, 2020
12
October, 2022
10
January, 2020
8
August, 2021
7
August, 2017
7
November, 2022
3
April, 2020
3
February, 2020
3
May, 2022
2
January, 2021
2
November, 2020
2
October, 2019
2
September, 2018
2
September, 2023
1
June, 2021
1
November, 2019
Available data
400
bed bed3+
63
bigWig
59
bed bed9
12
tsv
3
bigBed bed9
1
bigBed narrowPeak
Organism
480
Homo sapiens
Biosample type
246
primary cell
154
tissue
48
in vitro differentiated cells
31
cell line
1
stem cell
Organ
600
epithelium
423
brain
387
connective tissue
387
kidney
367
musculature of body
309
lung
283
intestine
237
limb
229
heart
217
bodily fluid
206
blood
205
embryo
204
vasculature
199
skin of body
186
pancreas
170
large intestine
159
blood vessel
145
extraembryonic component
124
liver
116
stomach
107
eye
87
mammary gland
85
bone element
83
small intestine
80
uterus
76
prostate gland
72
placenta
71
adrenal gland
69
adipose tissue
64
penis
64
ureter
62
lymph node
60
artery
49
thymus
45
gonad
41
spinal cord
40
esophagus
32
spleen
23
lymphoid tissue
23
testis
22
nerve
21
ovary
21
thyroid gland
vein
18
skeleton
17
mouth
16
bronchus
16
lymphatic vessel
13
bone marrow
11
breast
11
pituitary gland
9
tongue
9
urinary bladder
8
vagina
5
trachea
4
nose
Project
411
AMP
60
ENCODE
4
ITG
3
LungMap
2
T1D
Genome assembly (visualization)
480
hg19
158
GRCh38
2
hg18
organ_slims!
vein
BIOSAMPLE
TYPE
480 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
gene expression
pQTL
caQTL
primary cell
fibroblast
4
16
1
6
pericyte cell
1
10
10
1
fibroblast of lung
6
4
4
2
foreskin fibroblast
6
2
1
1
4
2
osteoblast
2
2
5
1
3
2
+ See 36 more…
tissue
adrenal gland
28
17
1
14
adipose tissue
7
8
2
6
1
1
3
tibial nerve
6
3
3
4
2
1
3
omental fat pad
5
2
2
2
1
3
subcutaneous adipose tissue
2
2
1
1
4
3
+ See 6 more…
in vitro differentiated cells
adipocyte
4
6
4
6
1
1
mesenchymal stem cell
3
3
1
2
1
1
chondrocyte
5
fibroblast
1
1
Adipose SGBS cell line (adipocyte)
1
+ See 7 more…
cell line
GM23248
2
1
1
1
1
1
fibroblast of cardiac tissue
2
1
2
HT1080
2
1
1
foreskin fibroblast
1
1
1
adipose tissue derived mesenchymal stem cell
1
1
+ See 7 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download