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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
DNase-seq
6
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
24
DNA accessibility
12
Transcription
6
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
histone
117
histone modification
92
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
20
June, 2019
17
July, 2019
6
November, 2017
2
November, 2018
1
February, 2023
1
October, 2019
Available data
44
bigWig
41
bam
26
bed narrowPeak
26
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
12
tsv
8
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
47
Homo sapiens
Biosample type
29
tissue
18
primary cell
Organ
554
connective tissue
543
liver
516
pancreas
424
adipose tissue
221
epithelium
126
heart
99
kidney
97
vasculature
92
blood vessel
73
artery
70
bone element
54
blood
54
bodily fluid
48
limb
47
brain
46
musculature of body
eye
18
embryo
18
ureter
12
skeleton
8
spleen
7
nerve
5
vein
2
pericardium
Project
47
AMP
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
47
AMP-T2D consortium
organ_slims!
eye
target.investigated_as!
histone
BIOSAMPLE
ASSAY
47 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 1 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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