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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 123ChIP-seq
  • 22DNase-seq
  • 5total RNA-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2RRBS
  • 1ATAC-seq
  • 1FAIRE-seq
Assay category
  • 123DNA binding
  • 24DNA accessibility
  • 12Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 117histone
  • 117histone modification
  • 92narrow histone mark
  • 25broad histone mark
  • 6control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 78October, 2019
  • 25May, 2019
  • 20June, 2019
  • 17July, 2019
  • 15November, 2017
  • 6October, 2017
  • 2November, 2018
  • 1February, 2023
Available data
  • 159bigWig
  • 155bam
  • 141bed narrowPeak
  • 65bigBed narrowPeak
  • 43tagAlign
  • 37bed broadPeak
  • 28bigBed broadPeak
  • 25bed bed3+
  • 17fastq
  • 12tsv
  • 3hdf5
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 164Homo sapiens
Biosample type
  • 143tissue
  • 21primary cell
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 164AMP
Genome assembly (visualization)
  • 217GRCh38
  • 164hg19
Lab
  • 164AMP-T2D consortium
Audit category:
  • 2inconsistent ontology term
Audit category:
  • 3missing controlled_by
BIOSAMPLE
ASSAY

164 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain1114111
temporal lobe1311
angular gyrus14
frontal cortex2111
superior frontal gyrus4
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell311
brain pericyte11
cerebellar granule cell2
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