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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 468total RNA-seq
  • 76ChIP-seq
  • 25ATAC-seq
  • 8DNase-seq
  • 4single cell RNA-seq
  • 3small RNA-seq
  • 2Capture-C
  • 1Hi-C
  • 1RRBS
  • 1pCHi-C
Assay category
  • 475Transcription
  • 76DNA binding
  • 33DNA accessibility
  • 13D chromatin structure
  • 1DNA methylation
Target of assay
  • 40transcription factor
  • 35histone
  • 35histone modification
  • 18narrow histone mark
  • 16broad histone mark
  • 10RNA binding protein
  • 2chromatin remodeller
  • 1control
Date released
  • 455February, 2021
  • 64August, 2017
  • 18July, 2019
  • 14June, 2019
  • 10February, 2023
  • 6November, 2020
  • 5October, 2018
  • 4August, 2021
  • 3October, 2019
  • 2April, 2018
  • 2July, 2018
  • 1January, 2018
  • 1May, 2021
  • 1May, 2023
  • 1November, 2018
  • 1November, 2019
  • 1October, 2017
Available data
  • 567bigWig
  • 563bam
  • 474tsv
  • 74bed narrowPeak
  • 73fastq
  • 27bigBed narrowPeak
  • 26bed bed3+
  • 9bed broadPeak
  • 8bigBed broadPeak
  • 6bed bed3
  • 4bed bedgraph
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1hdf5
  • 1tagAlign
Organism
  • 589Homo sapiens
Biosample type
  • 482tissue
  • 73in vitro differentiated cells
  • 34primary cell
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 589AMP
Genome assembly (visualization)
  • 589hg19
  • 566GRCh38
Lab
  • 585AMP-T2D consortium
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 17missing controlled_by
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

589 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
Capture-C
Hi-C
RRBS
pCHi-C
tissue
adipose tissue38213
bone tissue58
white adipose tissue12
omental fat pad43121
subcutaneous adipose tissue6211
in vitro differentiated cells
adipocyte448811
chondrocyte5
immature adipocyte2
osteoblast11
cardiac fibroblast1
primary cell
osteoblast5211
cardiac fibroblast321
mesenchymal stem cell6
pancreatic stellate cell4
brain pericyte11
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