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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
14
total RNA-seq
Assay category
15
DNA binding
14
Transcription
Target of assay
11
histone
11
histone modification
7
narrow histone mark
4
broad histone mark
3
transcription factor
1
control
Date released
10
February, 2018
9
December, 2017
8
August, 2021
2
May, 2021
Available data
29
bam
28
bigWig
19
fastq
14
bed narrowPeak
14
tsv
3
bed bed3+
Organism
29
Homo sapiens
Biosample type
21
in vitro differentiated cells
8
cell line
Organ
658
pancreas
602
liver
587
connective tissue
426
adipose tissue
310
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
45
blood
45
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
pericardium
1
pituitary gland
Project
29
AMP
Genome assembly (visualization)
29
GRCh38
29
hg19
1
hg18
Lab
29
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
3
inconsistent control read length
organ_slims!
pericardium
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
total RNA-seq
in vitro differentiated cells
pancreatic endoderm
13
4
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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