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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 101ChIP-seq
  • 76total RNA-seq
  • 70single cell RNA-seq
  • 38ATAC-seq
  • 11DNase-seq
  • 8Hi-C
  • 6RRBS
  • 1FAIRE-seq
Assay category
  • 146Transcription
  • 101DNA binding
  • 50DNA accessibility
  • 83D chromatin structure
  • 6DNA methylation
Target of assay
  • 90histone
  • 90histone modification
  • 48narrow histone mark
  • 42broad histone mark
  • 9transcription factor
  • 8RNA binding protein
  • 2control
  • 1chromatin remodeller
Date released
  • 61September, 2018
  • 33April, 2018
  • 33July, 2018
  • 27October, 2019
  • 26February, 2021
  • 17August, 2017
  • 16December, 2017
  • 14November, 2019
  • 13July, 2019
  • 12February, 2023
  • 12June, 2019
  • 9May, 2021
  • 6March, 2020
  • 6November, 2017
  • 5December, 2019
  • 5September, 2017
  • 4May, 2019
  • 3August, 2018
  • 3August, 2021
  • 3October, 2022
  • 2October, 2018
  • 1June, 2018
Available data
  • 285bigWig
  • 283bam
  • 173fastq
  • 147tsv
  • 145bed narrowPeak
  • 70bigBed narrowPeak
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 15bed bed3+
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 5tagAlign
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 311Homo sapiens
Biosample type
  • 227primary cell
  • 52cell line
  • 20in vitro differentiated cells
  • 12tissue
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 304AMP
  • 4T1D
  • 3HPAP
Genome assembly (visualization)
  • 311hg19
  • 294GRCh38
Lab
  • 308AMP-T2D consortium
  • 3Klaus Kaestner, Upenn
Audit category:
  • 61inconsistent ontology term
  • 4audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
BIOSAMPLE
ASSAY

311 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic beta cell7101271
pancreatic alpha cell7101261
pancreatic ductal cell134104
pancreatic acinar cell841251
endothelial cell of umbilical vein12221
cell line
EndoC_BH1133331
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte14
Hepatic endoderm2
pancreatic PP cell2
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina12
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