Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 59accessible chromatin
  • 18candidate regulatory elements
  • 9chromatin state
  • 9target gene predictions
  • 6binding sites
  • 4histone modifications
  • 2variant allelic effects
Date released
  • 27September, 2022
  • 24February, 2023
  • 22November, 2022
  • 17February, 2021
  • 6June, 2020
  • 4November, 2021
  • 2January, 2020
  • 2May, 2020
  • 2October, 2022
  • 1February, 2024
Available data
  • 98bed bed3+
  • 36bigWig
  • 9bed bed9
Organism
  • 107Homo sapiens
Collection Tags
  • 47CMDGA
  • 27EpiMap
  • 14ChIP-Atlas
  • 11ENCODE
  • 4AMP
  • 4T2DKP
  • 2DGA
Biosample type
  • 68tissue
  • 23primary cell
  • 10cell line
  • 6in vitro differentiated cells
Organ
  • 609epithelium
  • 423brain
  • 395connective tissue
  • 387kidney
  • 367musculature of body
  • 309lung
  • 283intestine
  • 237limb
  • 231heart
  • 217bodily fluid
  • 207vasculature
  • 206blood
  • 205embryo
  • 199skin of body
  • 186pancreas
  • 170large intestine
  • 159blood vessel
  • 145extraembryonic component
  • 126liver
  • 116stomach
  • 107eye
  • 87mammary gland
  • 85bone element
  • 83small intestine
  • 80uterus
  • 76prostate gland
  • 72placenta
  • 71adrenal gland
  • 69adipose tissue
  • 64penis
  • 64ureter
  • 62lymph node
  • 60artery
  • 49thymus
  • 45gonad
  • 41spinal cord
  • 40esophagus
  • 32spleen
  • 23lymphoid tissue
  • 23testis
  • 22nerve
  • 21ovary
  • 21thyroid gland
  • 21vein
  • 19lymphatic vessel
  • 18skeleton
  • 17mouth
  • 16bronchus
  • 13bone marrow
  • 11breast
  • 11pituitary gland
  • 9tongue
  • 9urinary bladder
  • 8vagina
  • 5trachea
  • 4nose
Project
  • 103AMP
  • 4ENCODE
Genome assembly (visualization)
  • 107hg19
  • 16GRCh38
BIOSAMPLE
TYPE

107 results

search-icontable-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
chromatin state
target gene predictions
binding sites
histone modifications
variant allelic effects
tissue
retina23633111
pigmented layer of retina20
eye1422
corneal epithelium1
primary cell
retinal pigment epithelial cell321121
iris pigment epithelial cell1211
fibroblast of the conjunctiva211
Muller cell2
retinal pigment epithelial cell1
cell line
WERI-Rb-1121121
fibroblast of the conjunctiva1
retinal cell1
in vitro differentiated cells
retinal pigment epithelial cell6
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego