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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 74ChIP-seq
  • 69total RNA-seq
  • 27DNase-seq
  • 12ATAC-seq
  • 3Hi-C
  • 2RRBS
  • 1small RNA-seq
Assay category
  • 74DNA binding
  • 70Transcription
  • 39DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 62histone
  • 62histone modification
  • 37broad histone mark
  • 25narrow histone mark
  • 12transcription factor
  • 6RNA binding protein
Date released
  • 64February, 2021
  • 47April, 2019
  • 30June, 2019
  • 17July, 2019
  • 15May, 2019
  • 8October, 2019
  • 4March, 2020
  • 3May, 2021
Available data
  • 182bam
  • 175bigWig
  • 113bed narrowPeak
  • 91bigBed narrowPeak
  • 70tsv
  • 27bed bed3+
  • 27bed broadPeak
  • 27bigBed broadPeak
  • 4tagAlign
  • 3bedpe bed3+
  • 3hic
  • 2bed bedMethyl
  • 2bigBed bedMethyl
Organism
  • 188Homo sapiens
Biosample type
  • 113tissue
  • 64cell line
  • 10primary cell
  • 1in vitro differentiated cells
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 188AMP
Genome assembly (visualization)
  • 266GRCh38
  • 188hg19
Lab
  • 188AMP-T2D consortium
Audit category:
  • 5inconsistent ontology term
BIOSAMPLE
ASSAY

188 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle2933211
heart1241611
heart right ventricle11111
right atrium auricular region7221
coronary artery321
cell line
smooth muscle cell of the coronary artery4528
primary cell
cardiac fibroblast321
cardiac atrium fibroblast1
cardiac ventricle fibroblast1
endothelial cell of coronary artery1
smooth muscle cell of the coronary artery1
in vitro differentiated cells
cardiac fibroblast1
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