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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 72DNase-seq
  • 39ChIP-seq
  • 11total RNA-seq
  • 4RRBS
  • 1FAIRE-seq
  • 1Hi-C
  • 1small RNA-seq
Assay category
  • 73DNA accessibility
  • 39DNA binding
  • 12Transcription
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 30histone
  • 30histone modification
  • 15broad histone mark
  • 15narrow histone mark
  • 9transcription factor
  • 7recombinant protein
  • 2RNA binding protein
Date released
  • 73June, 2019
  • 22October, 2019
  • 18April, 2019
  • 11July, 2019
  • 4May, 2019
  • 1August, 2021
Available data
  • 124bam
  • 124bigWig
  • 112bed narrowPeak
  • 97bigBed narrowPeak
  • 71bed bed3+
  • 71bed broadPeak
  • 71bigBed broadPeak
  • 12tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 129Homo sapiens
Biosample type
  • 92tissue
  • 25primary cell
  • 12cell line
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 129AMP
Genome assembly (visualization)
  • 205GRCh38
  • 129hg19
Lab
  • 128AMP-T2D consortium
  • 1Katalin Susztak, Upenn
Audit category:
  • 16inconsistent ontology term
BIOSAMPLE
ASSAY

129 results

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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
RRBS
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney1320111
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney8
primary cell
epithelial cell of proximal tubule1811
kidney epithelial cell1411
renal cortical epithelial cell111
glomerular endothelial cell11
kidney glomerular epithelial cell1
cell line
RCC 7860 HIF1a re-expression31
RCC 7860 HIF2a over-expression21
RCC 7860 vector21
glomerular visceral epithelial cell11
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