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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
ChIP-seq
154
total RNA-seq
22
ATAC-seq
4
DNase-seq
3
small RNA-seq
2
Hi-C
1
RRBS
1
pCHi-C
Assay category
398
DNA binding
157
Transcription
26
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
327
transcription factor
78
recombinant protein
68
histone modification
67
histone
53
RNA binding protein
45
narrow histone mark
22
broad histone mark
22
chromatin remodeller
control
2
other context
2
other post-translational modification
Date released
253
November, 2017
170
May, 2020
49
November, 2018
36
December, 2017
20
May, 2022
19
August, 2017
15
August, 2021
7
July, 2019
6
October, 2019
5
January, 2019
2
February, 2021
2
March, 2020
1
June, 2019
Available data
580
bigWig
547
bam
418
bed narrowPeak
362
fastq
339
bigBed narrowPeak
157
tsv
62
bed broadPeak
62
bigBed broadPeak
38
tagAlign
7
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
585
Homo sapiens
Biosample type
317
cell line
267
tissue
1
primary cell
Organ
656
pancreas
611
liver
588
connective tissue
426
adipose tissue
epithelium
188
heart
163
vasculature
158
blood vessel
158
brain
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
28
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
585
AMP
Genome assembly (visualization)
585
hg19
506
GRCh38
Lab
550
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
target.investigated_as!
control
BIOSAMPLE
ASSAY
585 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
309
5
1
1
1
tissue
liver
82
147
20
2
1
1
1
right lobe of liver
7
2
1
1
2
primary cell
hepatic stellate cell
1
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