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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 429ChIP-seq
  • 159total RNA-seq
  • 23ATAC-seq
  • 5DNase-seq
  • 3Hi-C
  • 3small RNA-seq
  • 2RRBS
  • 1pCHi-C
Assay category
  • 429DNA binding
  • 162Transcription
  • 28DNA accessibility
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 329transcription factor
  • 83histone modification
  • 82histone
  • 78recombinant protein
  • 55RNA binding protein
  • 52narrow histone mark
  • 30broad histone mark
  • 23chromatin remodeller
  • 14control
  • 2other context
  • 2other post-translational modification
Date released
  • 266November, 2017
  • 170May, 2020
  • 50December, 2017
  • 49November, 2018
  • 20August, 2017
  • 20May, 2022
  • 18August, 2021
  • 9July, 2019
  • 7October, 2019
  • 5December, 2019
  • 5January, 2019
  • 2February, 2021
  • 2June, 2019
  • 2March, 2020
Available data
  • 617bigWig
  • 585bam
  • 437bed narrowPeak
  • 390fastq
  • 354bigBed narrowPeak
  • 162tsv
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 42tagAlign
  • 13bed bed3+
  • 3tar
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hic
  • 1bed bed3
  • 1hdf5
Organism
  • 625Homo sapiens
Biosample type
  • 330cell line
  • 268tissue
  • 14in vitro differentiated cells
  • 13primary cell
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 625AMP
Genome assembly (visualization)
  • 625hg19
  • 531GRCh38
Lab
  • 590AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
Audit category:
  • 27inconsistent control
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

625 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
cell line
HepG23225111
tissue
liver83147202111
right lobe of liver72112
in vitro differentiated cells
hepatocyte14
primary cell
hepatocyte3511
Liver fetal (hepatocyte)1
endothelial cell of hepatic sinusoid1
hepatic stellate cell1
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