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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 324total RNA-seq
  • 163ChIP-seq
  • 80single cell RNA-seq
  • 71ATAC-seq
  • 8Hi-C
  • 6DNase-seq
  • 2FAIRE-seq
  • 2RRBS
  • 2small RNA-seq
Assay category
  • 406Transcription
  • 163DNA binding
  • 79DNA accessibility
  • 83D chromatin structure
  • 2DNA methylation
Target of assay
  • 142histone
  • 142histone modification
  • 73broad histone mark
  • 69narrow histone mark
  • 19transcription factor
  • 9RNA binding protein
  • 2control
Date released
  • 159August, 2017
  • 153July, 2018
  • 72September, 2018
  • 53November, 2019
  • 43May, 2021
  • 42October, 2018
  • 39April, 2018
  • 26February, 2021
  • 18May, 2022
  • 11March, 2020
  • 8October, 2019
  • 7September, 2017
  • 6July, 2019
  • 5October, 2017
  • 3August, 2018
  • 3March, 2019
  • 3November, 2018
  • 3October, 2022
  • 2June, 2019
  • 1June, 2018
  • 1May, 2019
Available data
  • 635bam
  • 607bigWig
  • 408tsv
  • 363fastq
  • 212bed narrowPeak
  • 89bigBed narrowPeak
  • 27bed bed3+
  • 18bed broadPeak
  • 14tagAlign
  • 7hic
  • 6bedpe bed3+
  • 5bigBed broadPeak
  • 3cool
  • 2bed bedMethyl
  • 2bigBed bedMethyl
  • 1bedpe
  • 1hdf5
Organism
  • 652Homo sapiens
Biosample type
  • 413tissue
  • 185primary cell
  • 58cell line
  • 2in vitro differentiated cells
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 649AMP
  • 6T1D
  • 3HPAP
Genome assembly (visualization)
  • 658hg19
  • 635GRCh38
Lab
  • 633AMP-T2D consortium
  • 18Kyle Gaulton, UCSD
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 55inconsistent ontology term
  • 3audit script error
Audit category:
  • 54missing controlled_by
Audit category:
  • 9inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

658 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
DNase-seq
FAIRE-seq
RRBS
small RNA-seq
tissue
islet of Langerhans260316422111
body of pancreas226422
pancreas1131211
endocrine pancreas14
primary cell
pancreatic beta cell1071271
pancreatic alpha cell1071261
pancreatic ductal cell413104
pancreatic acinar cell481251
pancreatic endocrine cell23
cell line
EndoC_BH1331331
Panc1611
in vitro differentiated cells
pancreatic PP cell2
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