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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 79ChIP-seq
  • 58total RNA-seq
  • 11ATAC-seq
  • 10DNase-seq
  • 5Hi-C
  • 1FAIRE-seq
  • 1RRBS
Assay category
  • 79DNA binding
  • 58Transcription
  • 22DNA accessibility
  • 53D chromatin structure
  • 1DNA methylation
Target of assay
  • 68histone
  • 68histone modification
  • 43broad histone mark
  • 25narrow histone mark
  • 9transcription factor
  • 5RNA binding protein
  • 2control
Date released
  • 64February, 2021
  • 39May, 2019
  • 37October, 2019
  • 10July, 2019
  • 6June, 2019
  • 6November, 2017
  • 3March, 2020
Available data
  • 159bam
  • 153bigWig
  • 97bed narrowPeak
  • 82bigBed narrowPeak
  • 58tsv
  • 16bed broadPeak
  • 16bigBed broadPeak
  • 12bed bed3+
  • 6fastq
  • 4tagAlign
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1bed bedMethyl
  • 1bigBed bedMethyl
  • 1tar
Organism
  • 165Homo sapiens
Biosample type
  • 70tissue
  • 64cell line
  • 31primary cell
Organ
  • 658pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 311epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 165AMP
Genome assembly (visualization)
  • 191GRCh38
  • 165hg19
Lab
  • 165AMP-T2D consortium
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

165 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
tissue
tibial artery1812
ascending aorta1311
thoracic aorta1221
aorta1111
coronary artery312
cell line
smooth muscle cell of the coronary artery4528
primary cell
endothelial cell of umbilical vein12221
brain microvascular endothelial cell311
choroid plexus epithelial cell311
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
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