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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1158ChIP-seq
  • 1137total RNA-seq
  • 181ATAC-seq
  • 171DNase-seq
  • 21single cell RNA-seq
  • 20Hi-C
  • 19RRBS
  • 7small RNA-seq
  • 3pCHi-C
  • 2FAIRE-seq
Assay category
  • 1165Transcription
  • 1158DNA binding
  • 354DNA accessibility
  • 203D chromatin structure
  • 19DNA methylation
Target of assay
  • 662histone modification
  • 661histone
  • 466transcription factor
  • 336broad histone mark
  • 324narrow histone mark
  • 97RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 28control
  • 5other context
  • 5other post-translational modification
Date released
  • 566February, 2021
  • 281November, 2017
  • 243August, 2017
  • 208May, 2021
  • 174May, 2020
  • 169October, 2019
  • 168June, 2019
  • 120July, 2018
  • 97May, 2019
  • 75December, 2017
  • 72September, 2018
  • 69November, 2018
  • 65April, 2019
  • 58November, 2019
  • 55July, 2019
  • 46October, 2018
  • 38May, 2022
  • 36February, 2023
  • 30December, 2018
  • 30February, 2018
  • 26January, 2019
  • 25March, 2020
  • 24August, 2021
  • 12October, 2017
  • 10April, 2018
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 3January, 2018
  • 2June, 2018
  • 1May, 2023
Available data
  • 2560bigWig
  • 2538bam
  • 1436bed narrowPeak
  • 1163tsv
  • 933bigBed narrowPeak
  • 882fastq
  • 283bed broadPeak
  • 248bigBed broadPeak
  • 192bed bed3+
  • 137tagAlign
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 15bedpe bed3+
  • 15hic
  • 7bed bedgraph
  • 6bed bed3
  • 5hdf5
  • 4tar
  • 3txt
  • 2ibed
Organism
  • 2713Homo sapiens
Biosample type
  • 1610tissue
  • 530cell line
  • 361primary cell
  • 215in vitro differentiated cells
  • 3stem cell
Organ
  • 614liver
  • 550pancreas
  • 541connective tissue
  • 412adipose tissue
  • 235epithelium
  • 173heart
  • 162vasculature
  • 156blood vessel
  • 118kidney
  • 117brain
  • 96limb
  • 91artery
  • 68musculature of body
  • 66bone element
  • 55blood
  • 55bodily fluid
  • 32eye
  • 31nerve
  • 27embryo
  • 18ureter
  • 16vein
  • 14spleen
  • 8skeleton
  • 1pericardium
Project
  • 2645AMP
  • 74T1D
Genome assembly (visualization)
  • 2719hg19
  • 2700GRCh38
  • 5hg18
Lab
  • 2556AMP-T2D consortium
  • 124Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 3Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
Audit category:
  • 176inconsistent ontology term
  • 28inconsistent control
  • 1audit script error
  • 1inconsistent replicate
Audit category:
  • 72missing controlled_by
Audit category:
  • 52inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
replication_type!
  • anisogenic
BIOSAMPLE
ASSAY

2719 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
pCHi-C
FAIRE-seq
tissue
adipose tissue13821
islet of Langerhans925837111
liver78145201111
bone tissue58
heart left ventricle2932211
cell line
HepG23225111
smooth muscle cell of the coronary artery4528
GM12878541
EndoC_BH1133331
H1-hESC8
primary cell
monocyte382813
CD8-positive, alpha-beta T cell332
pancreatic beta cell71071
pancreatic alpha cell71061
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte41441
cardiomyocytes347
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
hepatocyte14
stem cell
hESC3
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