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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1228total RNA-seq
  • 782ChIP-seq
  • 226ATAC-seq
  • 167DNase-seq
  • 102single cell RNA-seq
  • 18Hi-C
  • 18small RNA-seq
  • 4FAIRE-seq
  • 2Capture-C
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 1348Transcription
  • 782DNA binding
  • 398DNA accessibility
  • 183D chromatin structure
Target of assay
  • 660histone modification
  • 659histone
  • 349narrow histone mark
  • 309broad histone mark
  • 108transcription factor
  • 30RNA binding protein
  • 14control
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 548February, 2021
  • 315May, 2021
  • 260May, 2020
  • 254August, 2017
  • 163July, 2018
  • 159June, 2019
  • 156October, 2019
  • 85May, 2019
  • 72September, 2018
  • 68July, 2019
  • 64April, 2019
  • 50August, 2021
  • 49April, 2018
  • 42February, 2023
  • 40October, 2018
  • 39May, 2022
  • 36November, 2019
  • 31February, 2018
  • 20March, 2020
  • 19December, 2017
  • 15November, 2018
  • 13November, 2017
  • 13October, 2017
  • 7September, 2017
  • 6January, 2019
  • 6November, 2020
  • 3August, 2018
  • 3December, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2413bigWig
  • 2376bam
  • 1346tsv
  • 1050bed narrowPeak
  • 550fastq
  • 481bigBed narrowPeak
  • 214bed bed3+
  • 212tagAlign
  • 202bed broadPeak
  • 166bigBed broadPeak
  • 18hic
  • 15bedpe bed3+
  • 11bed bed3
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
Organism
  • 2543Homo sapiens
Biosample type
  • 1657tissue
  • 535primary cell
  • 229in vitro differentiated cells
  • 128cell line
Organ
  • 616pancreas
  • 579connective tissue
  • 426adipose tissue
  • 251liver
  • 243epithelium
  • 173heart
  • 140brain
  • 129vasculature
  • 128blood vessel
  • 103kidney
  • 92limb
  • 87artery
  • 70bone element
  • 61musculature of body
  • 31nerve
  • 30eye
  • 18embryo
  • 18ureter
  • 14spleen
  • 12skeleton
  • 3blood
  • 3bodily fluid
  • 3vein
  • 1pericardium
  • 1pituitary gland
Project
  • 2364AMP
  • 182T1D
  • 3HPAP
Genome assembly (visualization)
  • 2550GRCh38
  • 2549hg19
  • 5hg18
Lab
  • 2266AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 146inconsistent ontology term
  • 5audit script error
Audit category:
  • 74missing controlled_by
Audit category:
  • 22inconsistent control read length
  • 1inconsistent assembly
replication_type!
  • isogenic
BIOSAMPLE
ASSAY

2549 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
small RNA-seq
FAIRE-seq
Capture-C
pCHi-C
snATAC-seq
tissue
adipose tissue38213
islet of Langerhans26031231621
liver1464720211
bone tissue58
heart left ventricle328231
primary cell
monocyte538415
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1077121
pancreatic alpha cell1076121
pancreatic ductal cell413410
in vitro differentiated cells
cardiomyocytes593
adipocyte44841
neural progenitor cell71210
pancreatic endoderm410
embryonic stem cell225
cell line
smooth muscle cell of the coronary artery5228
EndoC_BH1311111
HepG2161
GM1287821
early embryonic cell1
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