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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 670ChIP-seq
  • 193total RNA-seq
  • 115ATAC-seq
  • 89single cell RNA-seq
  • 34DNase-seq
  • 19RRBS
  • 16Hi-C
  • 11small RNA-seq
  • 4FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 670DNA binding
  • 293Transcription
  • 154DNA accessibility
  • 19DNA methylation
  • 163D chromatin structure
Target of assay
  • 400transcription factor
  • 246histone
  • 246histone modification
  • 149narrow histone mark
  • 97broad histone mark
  • 85recombinant protein
  • 73RNA binding protein
  • 32chromatin remodeller
  • 22control
  • 2other context
  • 2other post-translational modification
Date released
  • 268November, 2017
  • 109May, 2021
  • 109October, 2019
  • 86May, 2020
  • 60December, 2017
  • 59July, 2019
  • 58November, 2018
  • 55August, 2017
  • 47June, 2019
  • 46August, 2021
  • 45July, 2018
  • 39April, 2018
  • 34February, 2021
  • 27December, 2018
  • 24November, 2019
  • 20January, 2019
  • 19March, 2020
  • 12February, 2023
  • 12May, 2019
  • 8October, 2018
  • 5December, 2019
  • 3August, 2018
  • 3March, 2019
  • 3October, 2022
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1May, 2022
  • 1October, 2017
Available data
  • 1082bam
  • 1059bigWig
  • 710bed narrowPeak
  • 584fastq
  • 512bigBed narrowPeak
  • 295tsv
  • 127tagAlign
  • 111bed broadPeak
  • 110bigBed broadPeak
  • 94bed bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bedpe bed3+
  • 11hic
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 1158Homo sapiens
Biosample type
  • 402cell line
  • 360primary cell
  • 243tissue
  • 150in vitro differentiated cells
  • 3stem cell
Organ
  • 385liver
  • 150pancreas
  • 144epithelium
  • 71brain
  • 58connective tissue
  • 52blood
  • 52bodily fluid
  • 39vasculature
  • 37kidney
  • 34blood vessel
  • 30heart
  • 17musculature of body
  • 15vein
  • 14adipose tissue
  • 13embryo
  • 8artery
  • 6eye
  • 4bone element
  • 4limb
  • 4skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 1039AMP
  • 116T1D
  • 3HPAP
Genome assembly (visualization)
  • 1158hg19
  • 1004GRCh38
Lab
  • 1028AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 106inconsistent ontology term
  • 28inconsistent control
  • 4audit script error
  • 1inconsistent replicate
Audit category:
  • 26missing controlled_by
Audit category:
  • 38inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

1158 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
cell line
HepG2306511
GM1287852
H1-hESC8
Panc1611
EndoC_BH1222
primary cell
monocyte46252
skeletal muscle myoblast15121
endothelial cell of umbilical vein12111
pancreatic alpha cell111
pancreatic beta cell111
tissue
islet of Langerhans222246111
liver41311
heart53211
brain51121
body of pancreas7
in vitro differentiated cells
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
adipocyte7811
hepatocyte14
cardiomyocytes12
stem cell
hESC3
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