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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 147ChIP-seq
  • 142total RNA-seq
  • 85single cell RNA-seq
  • 80ATAC-seq
  • 15DNase-seq
  • 11small RNA-seq
  • 7Hi-C
  • 3FAIRE-seq
  • 2Capture-C
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 238Transcription
  • 147DNA binding
  • 99DNA accessibility
  • 73D chromatin structure
Target of assay
  • 122histone
  • 122histone modification
  • 87narrow histone mark
  • 35broad histone mark
  • 21transcription factor
  • 4control
  • 3RNA binding protein
Date released
  • 108May, 2021
  • 86May, 2020
  • 48October, 2019
  • 44July, 2018
  • 39April, 2018
  • 36August, 2021
  • 36July, 2019
  • 33August, 2017
  • 19June, 2019
  • 9February, 2023
  • 8February, 2021
  • 7March, 2020
  • 3August, 2018
  • 3March, 2019
  • 3October, 2022
  • 2December, 2017
  • 2November, 2018
  • 2September, 2017
  • 1February, 2018
  • 1June, 2018
  • 1May, 2022
  • 1November, 2019
  • 1October, 2017
  • 1October, 2018
Available data
  • 460bam
  • 456bigWig
  • 239tsv
  • 162bed narrowPeak
  • 126fastq
  • 101tagAlign
  • 58bed bed3+
  • 30bigBed narrowPeak
  • 15bed broadPeak
  • 14bigBed broadPeak
  • 7hic
  • 6bed bed3
  • 6bedpe bed3+
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
Organism
  • 494Homo sapiens
Biosample type
  • 267primary cell
  • 145tissue
  • 82in vitro differentiated cells
Organ
  • 108pancreas
  • 76epithelium
  • 48connective tissue
  • 47brain
  • 15heart
  • 14adipose tissue
  • 11kidney
  • 11liver
  • 5musculature of body
  • 4bone element
  • 4skeleton
  • 3blood vessel
  • 3vasculature
  • 2artery
  • 2embryo
  • 2eye
  • 1pericardium
  • 1pituitary gland
  • 1vein
Project
  • 379AMP
  • 112T1D
  • 3HPAP
Genome assembly (visualization)
  • 494hg19
  • 427GRCh38
Lab
  • 369AMP-T2D consortium
  • 114Kyle Gaulton, UCSD
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 38inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
BIOSAMPLE
ASSAY

494 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
FAIRE-seq
Capture-C
pCHi-C
snATAC-seq
primary cell
monocyte46252
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
tissue
islet of Langerhans2226511
liver521
heart2211
frontal cortex1211
pancreas1111
in vitro differentiated cells
neural progenitor cell12710
adipocyte741
cardiomyocytes12
induced pluripotent stem cell9
embryonic stem cell4
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