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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 523ChIP-seq
  • 51total RNA-seq
  • 35ATAC-seq
  • 19DNase-seq
  • 19RRBS
  • 9Hi-C
  • 4single cell RNA-seq
  • 3pCHi-C
  • 1FAIRE-seq
Assay category
  • 523DNA binding
  • 55DNA accessibility
  • 55Transcription
  • 19DNA methylation
  • 93D chromatin structure
Target of assay
  • 379transcription factor
  • 124histone
  • 124histone modification
  • 85recombinant protein
  • 70RNA binding protein
  • 62broad histone mark
  • 62narrow histone mark
  • 32chromatin remodeller
  • 18control
  • 2other context
  • 2other post-translational modification
Date released
  • 268November, 2017
  • 61October, 2019
  • 58December, 2017
  • 56November, 2018
  • 28June, 2019
  • 27December, 2018
  • 26February, 2021
  • 23July, 2019
  • 23November, 2019
  • 22August, 2017
  • 20January, 2019
  • 12March, 2020
  • 12May, 2019
  • 10August, 2021
  • 7October, 2018
  • 5December, 2019
  • 3February, 2023
  • 1April, 2019
  • 1July, 2018
  • 1May, 2021
Available data
  • 622bam
  • 603bigWig
  • 548bed narrowPeak
  • 482bigBed narrowPeak
  • 458fastq
  • 96bed broadPeak
  • 96bigBed broadPeak
  • 56tsv
  • 36bed bed3+
  • 26tagAlign
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 664Homo sapiens
Biosample type
  • 402cell line
  • 98tissue
  • 93primary cell
  • 68in vitro differentiated cells
  • 3stem cell
Organ
  • 374liver
  • 68epithelium
  • 52blood
  • 52bodily fluid
  • 42pancreas
  • 36vasculature
  • 31blood vessel
  • 26kidney
  • 24brain
  • 15heart
  • 14vein
  • 12musculature of body
  • 11embryo
  • 10connective tissue
  • 6artery
  • 4eye
  • 4limb
  • 1pericardium
Project
  • 660AMP
  • 4T1D
Genome assembly (visualization)
  • 664hg19
  • 577GRCh38
Lab
  • 659AMP-T2D consortium
  • 3Struan F.A. Grant, CHOP
  • 2Bing Ren, UCSD
Audit category:
  • 68inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 34inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

664 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
cell line
HepG2306511
GM1287852
H1-hESC8
Panc1611
EndoC_BH1222
tissue
liver3611
islet of Langerhans191
body of pancreas7
brain511
heart51
primary cell
skeletal muscle myoblast15121
endothelial cell of umbilical vein1211
skeletal muscle satellite cell7
hepatocyte51
kidney epithelial cell411
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)1911
hepatocyte14
cardiomyocytes (cardiac muscle cell)2121
adipocyte41
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
stem cell
hESC3
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