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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1086total RNA-seq
  • 635ChIP-seq
  • 152DNase-seq
  • 146ATAC-seq
  • 17single cell RNA-seq
  • 11Hi-C
  • 7small RNA-seq
  • 1FAIRE-seq
Assay category
  • 1110Transcription
  • 635DNA binding
  • 299DNA accessibility
  • 113D chromatin structure
Target of assay
  • 538histone modification
  • 537histone
  • 274broad histone mark
  • 262narrow histone mark
  • 87transcription factor
  • 27RNA binding protein
  • 10control
  • 4chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 540February, 2021
  • 221August, 2017
  • 207May, 2021
  • 174May, 2020
  • 140June, 2019
  • 119July, 2018
  • 108October, 2019
  • 85May, 2019
  • 72September, 2018
  • 64April, 2019
  • 39October, 2018
  • 38May, 2022
  • 35November, 2019
  • 33February, 2023
  • 32July, 2019
  • 30February, 2018
  • 17December, 2017
  • 14August, 2021
  • 13March, 2020
  • 13November, 2017
  • 13November, 2018
  • 12October, 2017
  • 10April, 2018
  • 6January, 2019
  • 6November, 2020
  • 5September, 2017
  • 3December, 2018
  • 3January, 2018
  • 2June, 2018
  • 1May, 2023
Available data
  • 1957bigWig
  • 1916bam
  • 1107tsv
  • 888bed narrowPeak
  • 451bigBed narrowPeak
  • 424fastq
  • 187bed broadPeak
  • 156bed bed3+
  • 152bigBed broadPeak
  • 111tagAlign
  • 11hic
  • 9bedpe bed3+
  • 5bed bed3
Organism
  • 2049Homo sapiens
Biosample type
  • 1512tissue
  • 268primary cell
  • 147in vitro differentiated cells
  • 128cell line
Organ
  • 531connective tissue
  • 508pancreas
  • 412adipose tissue
  • 240liver
  • 167epithelium
  • 158heart
  • 126vasculature
  • 125blood vessel
  • 93brain
  • 92kidney
  • 92limb
  • 85artery
  • 66bone element
  • 56musculature of body
  • 31nerve
  • 28eye
  • 18ureter
  • 16embryo
  • 14spleen
  • 8skeleton
  • 3blood
  • 3bodily fluid
  • 2vein
Project
  • 1985AMP
  • 70T1D
Genome assembly (visualization)
  • 2123GRCh38
  • 2055hg19
  • 5hg18
Lab
  • 1897AMP-T2D consortium
  • 124Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 13Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
Audit category:
  • 108inconsistent ontology term
  • 1audit script error
Audit category:
  • 60missing controlled_by
Audit category:
  • 18inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

2055 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
Hi-C
small RNA-seq
FAIRE-seq
tissue
adipose tissue38211
islet of Langerhans25891811
liver1444212011
bone tissue58
heart left ventricle328221
primary cell
monocyte283813
CD8-positive, alpha-beta T cell233
pancreatic beta cell10771
pancreatic alpha cell10761
pancreatic endocrine cell23
in vitro differentiated cells
cardiomyocytes473
adipocyte441
pancreatic endoderm410
definitive endodermal cell24
primitive gut cell24
cell line
smooth muscle cell of the coronary artery5228
EndoC_BH1311111
HepG2161
GM1287821
early embryonic cell1
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