Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 1357target gene predictions
  • 976histone modifications
  • 944chromatin state
  • 905accessible chromatin
  • 871candidate regulatory elements
  • 816binding sites
  • 124variant allelic effects
  • 72Fine-mapped variants
  • 63eQTL
  • 12gene expression
  • 6caQTL
  • 5hQTL
  • 3meQTL
  • 3pQTL
  • 3sQTL
  • 2other
  • 2variant to gene
Date released
  • 2511September, 2022
  • 1575February, 2021
  • 333November, 2021
  • 306February, 2024
  • 298May, 2021
  • 288June, 2020
  • 138May, 2020
  • 117March, 2020
  • 99October, 2022
  • 74August, 2021
  • 72January, 2020
  • 56January, 2021
  • 49May, 2022
  • 41November, 2022
  • 38May, 2024
  • 35August, 2017
  • 26February, 2023
  • 25February, 2020
  • 19April, 2020
  • 14November, 2019
  • 14October, 2019
  • 9May, 2019
  • 8April, 2019
  • 5January, 2022
  • 5September, 2023
  • 3September, 2018
  • 2November, 2020
  • 1August, 2020
  • 1August, 2022
  • 1June, 2021
Available data
  • 5136bed bed3+
  • 869bed bed9
  • 537bigWig
  • 96tsv
  • 40bigBed bed9
  • 34bed bed9+
  • 16bigBed narrowPeak
  • 4bam
  • 3bed gappedPeak
  • 3xls
Organism
  • 6117Homo sapiens
Collection Tags
  • 2499EpiMap
  • 1847ChIP-Atlas
  • 423DGA
  • 419AMP
  • 403T2DKP
  • 223T1D
  • 180BLUEPRINT
  • 1744DN
  • 142 T2DKP
  • 99ENCODE
  • 96GTEx
  • 72CMDGA
  • 26FNIH_projects-heart
  • 12FNIH_projects-liver
  • 12HPAP
  • 12ROADMAP
  • 10T2D
Biosample type
  • 2162cell line
  • 1980tissue
  • 1673primary cell
  • 343in vitro differentiated cells
  • 4stem cell
Organ
  • 557epithelium
  • 372brain
  • 355connective tissue
  • 303kidney
  • 289musculature of body
  • 248lung
  • 225intestine
  • 197heart
  • 195bodily fluid
  • 189limb
  • 186blood
  • 181vasculature
  • 175embryo
  • 175pancreas
  • 158skin of body
  • 139blood vessel
  • 134large intestine
  • 119extraembryonic component
  • 117liver
  • 98eye
  • 88stomach
  • 75uterus
  • 74bone element
  • 73mammary gland
  • 65small intestine
  • 62prostate gland
  • 59placenta
  • 58adipose tissue
  • 57adrenal gland
  • 56artery
  • 49lymph node
  • 46penis
  • 46ureter
  • 40thymus
  • 36gonad
  • 33spinal cord
  • 30esophagus
  • 23spleen
  • 19lymphoid tissue
  • 19nerve
  • 18testis
  • 17lymphatic vessel
  • 17ovary
  • 17skeleton
  • 17thyroid gland
  • 17vein
  • 14bronchus
  • 13mouth
  • 12bone marrow
  • 11pituitary gland
  • 8breast
  • 8urinary bladder
  • 7tongue
  • 6vagina
  • 5trachea
  • 4nose
Project
  • 5749AMP
  • 333ENCODE
  • 58T1D
  • 19LungMap
  • 5ITG
Genome assembly (visualization)
  • 6164hg19
  • 1909GRCh38
  • 4hg18
software_used.software.name!
  • encode-ccres
BIOSAMPLE
TYPE

6164 results

search-icontable-tab-icon
Clear Filters
target gene predictions
histone modifications
chromatin state
accessible chromatin
candidate regulatory elements
binding sites
variant allelic effects
Fine-mapped variants
eQTL
gene expression
caQTL
hQTL
meQTL
pQTL
sQTL
other
variant to gene
cell line
HeLa-S355331
A549191181182
H1-hESC3911112
K5622317162
MCF-7625153
tissue
heart2012151912
stomach21119319
kidney142161014111
brain1631821611
muscle of arm16161161
primary cell
monocyte286181121
CD8-positive, alpha-beta T cell53014
common myeloid progenitor, CD34-positive141313
B cell108611
endothelial cell7115322111
in vitro differentiated cells
neural progenitor cell5144104
hematopoietic multipotent progenitor cell101101101
adipocyte616421
embryonic stem cell11551
mesenchymal stem cell312121
stem cell
H1-hESC1
mesenchymal stem cell1
mesendoderm1
undifferentiated ESC (H9 cell line)1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego