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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1279total RNA-seq
  • 934ChIP-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 934DNA binding
  • 453DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 784histone modification
  • 783histone
  • 487transcription factor
  • 411narrow histone mark
  • broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 574February, 2021
  • 271November, 2017
  • 260May, 2020
  • 252May, 2021
  • 215August, 2017
  • 179June, 2019
  • 165October, 2019
  • 164July, 2018
  • 91July, 2019
  • 71November, 2018
  • 62December, 2017
  • 55September, 2018
  • 53August, 2021
  • 53November, 2019
  • 49April, 2018
  • 45February, 2023
  • 39May, 2019
  • 39May, 2022
  • 32March, 2020
  • 30December, 2018
  • 28April, 2019
  • 28October, 2018
  • 23February, 2018
  • 22January, 2019
  • 8October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2660bam
  • 2645bigWig
  • 1402tsv
  • 1235bed narrowPeak
  • 891fastq
  • 757bigBed narrowPeak
  • 262bed broadPeak
  • 246bigBed broadPeak
  • 238bed bed3+
  • 153tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 2840Homo sapiens
Biosample type
  • 1557tissue
  • 512cell line
  • 510primary cell
  • 261in vitro differentiated cells
  • 2stem cell
Organ
  • 595liver
  • 585pancreas
  • 573connective tissue
  • 426adipose tissue
  • 269epithelium
  • 151heart
  • 139brain
  • 122vasculature
  • 116blood vessel
  • 114kidney
  • 79artery
  • 70bone element
  • 62limb
  • 57musculature of body
  • 55blood
  • 55bodily fluid
  • 34eye
  • 25embryo
  • 18ureter
  • 15nerve
  • 12skeleton
  • 10spleen
  • 10vein
  • 2pericardium
  • 1pituitary gland
Project
  • 2697AMP
  • 142T1D
  • 3HPAP
Genome assembly (visualization)
  • 2842hg19
  • 2735GRCh38
  • 5hg18
Lab
  • 2619AMP-T2D consortium
  • 174Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 16Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 200inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 62missing controlled_by
Audit category:
  • 41inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
target.investigated_as!
  • broad histone mark
BIOSAMPLE
ASSAY

2842 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue38213
islet of Langerhans260214216211
liver14773202111
bone tissue58
heart441611
cell line
HepG25313111
smooth muscle cell of the coronary artery5248
GM12878541
EndoC_BH133731
H1-hESC8
primary cell
monocyte534015
pancreatic beta cell1047121
pancreatic alpha cell1046121
pancreatic acinar cell445121
pancreatic ductal cell47410
in vitro differentiated cells
cardiomyocytes593
adipocyte436811
neural progenitor cell7710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm49
stem cell
hESC2
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