Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1279total RNA-seq
  • 522ChIP-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 522DNA binding
  • 453DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 784histone modification
  • histone
  • 487transcription factor
  • 411narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 574February, 2021
  • 257November, 2017
  • 233May, 2020
  • 200May, 2021
  • 168June, 2019
  • 164July, 2018
  • 154August, 2017
  • 91July, 2019
  • 71November, 2018
  • 49April, 2018
  • 49November, 2019
  • 47December, 2017
  • 46October, 2019
  • 45February, 2023
  • 42August, 2021
  • 40September, 2018
  • 39May, 2022
  • 30December, 2018
  • 29March, 2020
  • 19January, 2019
  • 17October, 2018
  • 15February, 2018
  • 7October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5April, 2019
  • 5December, 2019
  • 5May, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2272bam
  • 2235bigWig
  • 1402tsv
  • 836bed narrowPeak
  • 781fastq
  • 624bigBed narrowPeak
  • 233bed broadPeak
  • 232bigBed broadPeak
  • 225bed bed3+
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 11tagAlign
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
Organism
  • 2430Homo sapiens
Biosample type
  • 1318tissue
  • 493cell line
  • 398primary cell
  • 220in vitro differentiated cells
  • 1stem cell
Organ
  • 554connective tissue
  • 543liver
  • 516pancreas
  • 424adipose tissue
  • 221epithelium
  • 126heart
  • 99kidney
  • 97vasculature
  • 92blood vessel
  • 73artery
  • 70bone element
  • 54blood
  • 54bodily fluid
  • 48limb
  • 47brain
  • 46musculature of body
  • 33eye
  • 18embryo
  • 18ureter
  • 12skeleton
  • 8spleen
  • 7nerve
  • 5vein
  • 2pericardium
Project
  • 2329AMP
  • 98T1D
  • 3HPAP
Genome assembly (visualization)
  • 2430hg19
  • 2324GRCh38
  • 5hg18
Lab
  • 2259AMP-T2D consortium
  • 124Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 181inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 34missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
target.investigated_as!
  • histone
BIOSAMPLE
ASSAY

2430 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue3823
islet of Langerhans26094216211
liver14739202111
bone tissue58
heart41611
cell line
HepG25304111
smooth muscle cell of the coronary artery5248
GM12878531
EndoC_BH133131
H1-hESC8
primary cell
monocyte5315
pancreatic beta cell107121
pancreatic alpha cell106121
pancreatic acinar cell45121
pancreatic ductal cell4410
in vitro differentiated cells
cardiomyocytes593
adipocyte423811
cardiac precursors (cardiac muscle cell)1911
neural progenitor cell710
induced pluripotent stem cell9
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego