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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1279total RNA-seq
  • 894ChIP-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 894DNA binding
  • 453DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 784histone modification
  • 783histone
  • 487transcription factor
  • narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 574February, 2021
  • 267November, 2017
  • 264May, 2021
  • 233May, 2020
  • 216August, 2017
  • 176June, 2019
  • 164July, 2018
  • 98October, 2019
  • 91July, 2019
  • 71November, 2018
  • 63May, 2019
  • 62December, 2017
  • 57September, 2018
  • 55November, 2019
  • 49April, 2018
  • 49August, 2021
  • 45February, 2023
  • 42April, 2019
  • 39May, 2022
  • 36October, 2018
  • 30December, 2018
  • 29March, 2020
  • 23February, 2018
  • 23January, 2019
  • 12October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2611bam
  • 2607bigWig
  • 1402tsv
  • 1200bed narrowPeak
  • 899fastq
  • 830bigBed narrowPeak
  • 269bed broadPeak
  • 248bigBed broadPeak
  • 237bed bed3+
  • 96tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
Organism
  • 2798Homo sapiens
Biosample type
  • 1516tissue
  • 516primary cell
  • 511cell line
  • 257in vitro differentiated cells
  • 2stem cell
Organ
  • 589pancreas
  • 573liver
  • 571connective tissue
  • 424adipose tissue
  • 263epithelium
  • 163heart
  • 140vasculature
  • 135blood vessel
  • 114kidney
  • 87artery
  • 82limb
  • 72brain
  • 70bone element
  • 62musculature of body
  • 54blood
  • 54bodily fluid
  • 33eye
  • 23nerve
  • 22embryo
  • 18ureter
  • 12skeleton
  • 12spleen
  • 12vein
  • 2pericardium
Project
  • 2657AMP
  • 142T1D
  • 3HPAP
Genome assembly (visualization)
  • 2802hg19
  • 2717GRCh38
  • 5hg18
Lab
  • 2566AMP-T2D consortium
  • 188Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 15Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 195inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 58missing controlled_by
Audit category:
  • 40inconsistent control read length
  • 8inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

2802 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue3823
islet of Langerhans260194216211
liver14749202111
bone tissue58
body of pancreas220422
primary cell
monocyte534415
pancreatic beta cell1037121
pancreatic alpha cell1036121
CD8-positive, alpha-beta T cell4232
pancreatic acinar cell445121
cell line
HepG25313111
smooth muscle cell of the coronary artery5248
GM12878531
EndoC_BH133731
H1-hESC8
in vitro differentiated cells
cardiomyocytes593
adipocyte436811
neural progenitor cell7510
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm48
stem cell
hESC2
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