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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1279total RNA-seq
  • 818ChIP-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 27Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1403Transcription
  • 818DNA binding
  • 453DNA accessibility
  • 273D chromatin structure
  • 19DNA methylation
Target of assay
  • 784histone modification
  • 783histone
  • transcription factor
  • 411narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 569February, 2021
  • 312May, 2021
  • 260May, 2020
  • 229August, 2017
  • 210October, 2019
  • 183June, 2019
  • 164July, 2018
  • 92May, 2019
  • 91July, 2019
  • 72September, 2018
  • 60April, 2019
  • 58November, 2019
  • 49April, 2018
  • 49August, 2021
  • 45February, 2023
  • 43November, 2017
  • 39May, 2022
  • 35December, 2017
  • 32March, 2020
  • 32October, 2018
  • 31February, 2018
  • 13October, 2017
  • 12January, 2019
  • 10November, 2018
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 2December, 2018
  • 1May, 2023
Available data
  • 2529bigWig
  • 2522bam
  • 1402tsv
  • 1138bed narrowPeak
  • 563fastq
  • 562bigBed narrowPeak
  • 249bed broadPeak
  • 231bed bed3+
  • 229tagAlign
  • 213bigBed broadPeak
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2720Homo sapiens
Biosample type
  • 1667tissue
  • 618primary cell
  • 260in vitro differentiated cells
  • 178cell line
  • 3stem cell
Organ
  • 639pancreas
  • 549connective tissue
  • 409adipose tissue
  • 302epithelium
  • 296liver
  • 176heart
  • 161brain
  • 156vasculature
  • 151blood vessel
  • 120kidney
  • 96limb
  • 88artery
  • 73musculature of body
  • 70bone element
  • 33eye
  • 31nerve
  • 26embryo
  • 18ureter
  • 17vein
  • 12skeleton
  • 8spleen
  • 4blood
  • 4bodily fluid
  • 2pericardium
  • 1pituitary gland
Project
  • 2537AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2726hg19
  • 2679GRCh38
  • 5hg18
Lab
  • 2449AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 7Struan F.A. Grant, CHOP
  • 6Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 200inconsistent ontology term
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 52missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 4inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

2726 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue38213
islet of Langerhans260244216211
liver14746202111
bone tissue58
kidney2013111
primary cell
monocyte538415
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1077121
pancreatic alpha cell1076121
pancreatic ductal cell413410
in vitro differentiated cells
cardiomyocytes59
adipocyte426811
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm410
cell line
smooth muscle cell of the coronary artery528
EndoC_BH1331231
HepG2534111
H1-hESC8
Panc1611
stem cell
hESC3
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