Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 371ChIP-seq
Assay category
  • 371DNA binding
Target of assay
  • 784histone modification
  • 783histone
  • 487transcription factor
  • 411narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 64May, 2021
  • 61August, 2017
  • 58May, 2019
  • 52October, 2019
  • 37April, 2019
  • 19October, 2018
  • 17September, 2018
  • 15December, 2017
  • 10November, 2017
  • 8February, 2018
  • 8June, 2019
  • 7August, 2021
  • 6November, 2019
  • 5October, 2017
  • 4January, 2019
Available data
  • 371bigWig
  • 363bed narrowPeak
  • 338bam
  • 206bigBed narrowPeak
  • 117fastq
  • 85tagAlign
  • 36bed broadPeak
  • 16bigBed broadPeak
  • 12bed bed3+
Organism
  • 367Homo sapiens
Biosample type
  • 198tissue
  • 118primary cell
  • 36in vitro differentiated cells
  • 18cell line
  • 1stem cell
Organ
  • 73pancreas
  • 43blood vessel
  • 43vasculature
  • 42epithelium
  • 37heart
  • 34limb
  • 30liver
  • 25brain
  • 16connective tissue
  • 16musculature of body
  • 16nerve
  • 15kidney
  • 14artery
  • 7vein
  • 4embryo
  • 4spleen
Project
  • 327AMP
  • 44T1D
Genome assembly (visualization)
  • 392GRCh38
  • 371hg19
Lab
  • 306AMP-T2D consortium
  • 64Kyle Gaulton, UCSD
  • 1Bing Ren, UCSD
Audit category:
  • 14inconsistent ontology term
Audit category:
  • 24missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 2inconsistent assembly
BIOSAMPLE
ASSAY

371 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
tibial nerve16
heart left ventricle15
tibial artery14
body of pancreas11
islet of Langerhans10
primary cell
monocyte44
CD8-positive, alpha-beta T cell20
pancreatic endocrine cell11
endothelial cell of umbilical vein7
pancreatic ductal cell6
in vitro differentiated cells
adipocyte12
hepatocyte7
neural progenitor cell5
pancreatic endoderm4
definitive endodermal cell2
cell line
HepG29
EndoC_BH16
Panc13
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego