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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 411ChIP-seq
Assay category
  • 411DNA binding
Target of assay
  • 784histone modification
  • 783histone
  • 487transcription factor
  • 411narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 119October, 2019
  • 60August, 2017
  • 52May, 2021
  • 34May, 2019
  • 27May, 2020
  • 23April, 2019
  • 15December, 2017
  • 15September, 2018
  • 14November, 2017
  • 11August, 2021
  • 11June, 2019
  • 11October, 2018
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 1October, 2017
Available data
  • 409bigWig
  • 398bed narrowPeak
  • 387bam
  • 142tagAlign
  • 133bigBed narrowPeak
  • 109fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 409Homo sapiens
Biosample type
  • 239tissue
  • 112primary cell
  • 40in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 92brain
  • 69pancreas
  • 52liver
  • 48epithelium
  • 25heart
  • 25vasculature
  • 24blood vessel
  • 18connective tissue
  • 15kidney
  • 14limb
  • 11musculature of body
  • 8nerve
  • 7embryo
  • 6artery
  • 5vein
  • 2adipose tissue
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1pituitary gland
Project
  • 367AMP
  • 44T1D
Genome assembly (visualization)
  • 411hg19
  • 410GRCh38
Lab
  • 359AMP-T2D consortium
  • 50Kyle Gaulton, UCSD
  • 2Bing Ren, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 28missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

411 results

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Clear Filters
ChIP-seq
tissue
liver34
islet of Langerhans12
kidney10
heart left ventricle9
tibial nerve8
primary cell
monocyte40
pancreatic endocrine cell12
CD8-positive, alpha-beta T cell10
pancreatic ductal cell7
skeletal muscle myoblast6
in vitro differentiated cells
adipocyte12
neural progenitor cell7
hepatocyte5
pancreatic endoderm5
Hepatic endoderm2
cell line
HepG29
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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