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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 487ChIP-seq
Assay category
  • 487DNA binding
Target of assay
  • 784histone modification
  • 783histone
  • 487transcription factor
  • 411narrow histone mark
  • 371broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 238November, 2017
  • 61November, 2018
  • 47August, 2017
  • 42December, 2017
  • 28December, 2018
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 5April, 2019
  • 5February, 2021
  • 5May, 2019
  • 4June, 2019
  • 4May, 2021
  • 1November, 2019
Available data
  • 487bigWig
  • 476bam
  • 460bed narrowPeak
  • 445fastq
  • 401bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • 19bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 487Homo sapiens
Biosample type
  • 352cell line
  • 88tissue
  • 37in vitro differentiated cells
  • 10primary cell
Organ
  • 329liver
  • 51blood
  • 51bodily fluid
  • 40connective tissue
  • 19pancreas
  • 17adipose tissue
  • 12heart
  • 9epithelium
  • 9kidney
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 487AMP
Genome assembly (visualization)
  • 487hg19
  • 448GRCh38
Lab
  • 476AMP-T2D consortium
  • 11Bing Ren, UCSD
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 34missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

487 results

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Clear Filters
ChIP-seq
cell line
HepG2288
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver37
white adipose tissue12
body of pancreas9
islet of Langerhans7
spleen6
in vitro differentiated cells
adipocyte22
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
definitive endodermal cell2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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