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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
ChIP-seq
22
total RNA-seq
18
ATAC-seq
7
DNase-seq
4
pCHi-C
2
Hi-C
1
FAIRE-seq
Assay category
219
DNA binding
26
DNA accessibility
22
Transcription
2
3D chromatin structure
Target of assay
186
histone
186
histone modification
134
narrow histone mark
52
broad histone mark
33
control
Date released
552
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
309
May, 2021
273
October, 2019
199
May, 2022
194
February, 2023
186
August, 2021
162
July, 2018
115
June, 2019
115
May, 2019
96
July, 2019
90
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
59
September, 2020
57
April, 2019
49
April, 2018
47
March, 2020
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
11
September, 2017
10
November, 2020
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
2
June, 2018
1
May, 2023
1
October, 2022
Available data
214
bam
181
bigWig
167
bed narrowPeak
69
bigBed narrowPeak
49
tagAlign
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
8
tsv
1
bedpe bed3+
1
hdf5
1
hic
1
tagAlign bed3+
1
tar
Organism
273
Homo sapiens
Biosample type
236
tissue
20
primary cell
15
cell line
2
in vitro differentiated cells
Organ
84
brain
69
limb
46
blood vessel
46
vasculature
42
nerve
33
epithelium
26
artery
21
eye
20
vein
18
pancreas
kidney
8
heart
6
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
273
AMP
Genome assembly (visualization)
184
hg19
177
GRCh38
Lab
273
AMP-T2D consortium
Audit category:
inconsistent ontology term
audit script error
Audit category:
1
inconsistent assembly
audit.ERROR.category!
audit script error
inconsistent ontology term
organ_slims!
kidney
spinal cord
BIOSAMPLE
ASSAY
273 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
FAIRE-seq
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 75 more…
primary cell
endothelial cell of umbilical vein
17
2
1
cell line
Panc1
13
1
1
in vitro differentiated cells
adipocyte
2
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