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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
64
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
control
3
other context
3
other post-translational modification
Date released
661
February, 2021
361
August, 2017
335
November, 2017
307
August, 2021
274
October, 2019
273
May, 2020
237
May, 2021
210
June, 2019
168
July, 2018
106
February, 2023
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
65
May, 2022
59
November, 2019
57
March, 2020
49
April, 2018
47
October, 2018
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
15
May, 2023
11
November, 2020
8
January, 2018
6
December, 2019
5
March, 2019
5
September, 2017
4
August, 2018
3
June, 2018
1
October, 2022
Available data
82
fastq
81
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
82
Homo sapiens
Biosample type
58
cell line
23
tissue
1
primary cell
Organ
53
liver
12
blood
12
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
82
AMP
Genome assembly (visualization)
79
GRCh38
71
hg19
Lab
82
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
audit.ERROR.category!
audit script error
inconsistent replicate
target.investigated_as!
control
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
12
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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