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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
554
ChIP-seq
244
ATAC-seq
175
single cell RNA-seq
174
DNase-seq
85
RNA microarray
27
WGBS
26
snATAC-seq
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1200
Transcription
554
DNA binding
448
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Target of assay
460
histone modification
459
histone
264
broad histone mark
195
narrow histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
540
February, 2021
255
August, 2017
229
August, 2021
October, 2019
170
May, 2020
163
June, 2019
120
July, 2018
95
February, 2023
93
May, 2019
77
July, 2019
70
November, 2017
66
April, 2019
65
May, 2022
47
September, 2023
45
October, 2018
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
36
December, 2017
25
February, 2020
23
November, 2018
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
2
January, 2018
2
November, 2020
1
December, 2019
Available data
1612
bigWig
1581
bam
1061
tsv
833
bed narrowPeak
514
bigBed narrowPeak
310
fastq
209
bed broadPeak
197
bed bed3+
172
bigBed broadPeak
151
txt
146
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
Organism
2358
Homo sapiens
Biosample type
2366
tissue
992
primary cell
557
cell line
347
in vitro differentiated cells
9
stem cell
Organ
521
connective tissue
472
pancreas
463
adipose tissue
309
liver
289
heart
284
kidney
161
brain
158
bone element
96
blood vessel
96
vasculature
77
musculature of body
52
limb
45
artery
35
eye
20
lung
18
ureter
17
spleen
16
skeleton
14
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2269
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1695
GRCh38
1588
hg19
Lab
2016
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
audit script error
inconsistent replicate
month_released!
October, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
2366 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
278
37
55
6
1
6
3
1
1
2
adipose tissue
382
1
2
3
1
liver
166
97
20
1
2
3
1
1
1
1
kidney
49
19
75
59
13
6
1
1
1
bone element
84
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