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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
136
total RNA-seq
35
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
192
DNA binding
136
Transcription
36
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
132
May, 2021
63
August, 2017
42
August, 2021
42
December, 2017
39
February, 2018
22
February, 2021
13
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
1
August, 2018
Available data
285
bam
254
bigWig
135
fastq
132
bed narrowPeak
129
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
379
Homo sapiens
Biosample type
2579
tissue
958
primary cell
649
cell line
379
in vitro differentiated cells
10
stem cell
Organ
88
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
379
AMP
Genome assembly (visualization)
285
hg19
260
GRCh38
4
hg18
Lab
328
AMP-T2D consortium
47
Kyle Gaulton, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
114
inconsistent ontology term
audit script error
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.ERROR.category!
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bed bedgraph
month_released!
June, 2019
BIOSAMPLE
ASSAY
379 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
62
5
4
1
1
cardiomyocytes
3
59
embryonic stem cell
40
7
5
1
neural progenitor cell
21
7
10
pancreatic endoderm
17
4
1
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