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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
33
ChIP-seq
2
ATAC-seq
Assay category
175
DNA accessibility
33
DNA binding
Target of assay
33
histone
33
histone modification
19
broad histone mark
14
narrow histone mark
Date released
160
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
4
October, 2019
2
October, 2017
1
March, 2019
Available data
1879
bam
1744
bigWig
1064
tsv
950
bed narrowPeak
555
bigBed narrowPeak
351
fastq
234
tagAlign
208
bed broadPeak
187
bed bed3+
173
bigBed broadPeak
151
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
1
tagAlign bed3+
Organism
202
Homo sapiens
Biosample type
208
tissue
59
cell line
48
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
limb
34
brain
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
eye
3
liver
2
nerve
1
spleen
Project
208
AMP
Genome assembly (visualization)
191
hg19
186
GRCh38
Lab
206
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
1
inconsistent assembly
audit.ERROR.category!
audit script error
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
eye
BIOSAMPLE
ASSAY
208 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
muscle of leg
13
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