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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
Assay category
85
DNA binding
Target of assay
53
histone
53
histone modification
35
transcription factor
28
narrow histone mark
25
broad histone mark
6
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
38
August, 2017
32
September, 2018
8
November, 2017
4
October, 2017
3
November, 2018
December, 2017
Available data
85
fastq
84
bam
83
bigWig
46
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
4
tagAlign
2
bed broadPeak
Organism
85
Homo sapiens
Biosample type
44
primary cell
25
tissue
11
cell line
5
in vitro differentiated cells
Organ
53
pancreas
21
epithelium
17
connective tissue
12
adipose tissue
11
liver
4
brain
Project
85
AMP
Genome assembly (visualization)
83
hg19
77
GRCh38
Lab
85
AMP-T2D consortium
Audit category:
85
missing controlled_by
Audit category:
4
inconsistent control run_type
3
inconsistent control read length
audit.ERROR.category!
audit script error
month_released!
December, 2017
January, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
85 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
tissue
white adipose tissue
12
islet of Langerhans
9
brain
4
cell line
HepG2
11
in vitro differentiated cells
adipocyte
5
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