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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
47
WGBS
29
DNase-seq
29
snATAC-seq
17
pCHi-C
10
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
258
DNA accessibility
257
DNA binding
58
DNA methylation
5
3D chromatin structure
Target of assay
217
histone
217
histone modification
113
broad histone mark
104
narrow histone mark
33
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
55
June, 2019
54
August, 2017
48
July, 2018
43
April, 2018
31
July, 2019
21
February, 2021
13
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2023
1
November, 2018
Available data
593
bigWig
584
bam
377
fastq
277
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
1
bed bed3
1
hic
Organism
1031
Homo sapiens
Biosample type
2762
tissue
1031
primary cell
636
cell line
375
in vitro differentiated cells
8
stem cell
Organ
398
epithelium
339
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
532
AMP
294
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
603
hg19
519
GRCh38
Lab
497
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
audit.WARNING.category!
inconsistent control read length
organ_slims!
vein
BIOSAMPLE
ASSAY
1031 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
11
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
11
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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