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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
94
total RNA-seq
49
ATAC-seq
47
WGBS
31
snATAC-seq
2
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
Assay category
237
Transcription
80
DNA accessibility
47
DNA methylation
2
DNA binding
1
3D chromatin structure
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
134
May, 2022
76
February, 2023
59
September, 2020
47
September, 2023
19
April, 2020
18
February, 2021
7
August, 2020
4
March, 2020
3
March, 2023
Available data
153
zippedFastqFolder
142
fastq
12
bigWig
6
tsv
2
bam
2
bed narrowPeak
1
hic
Organism
364
Homo sapiens
Biosample type
295
primary cell
70
tissue
cell line
2
stem cell
Organ
153
pancreas
149
epithelium
47
kidney
19
lung
Project
AMP
294
HPAP
47
KPMP
19
LungMap
4
T1D
2
community
1
ITG
Genome assembly (visualization)
13
GRCh38
2
hg19
Lab
294
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
2
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
audit.ERROR.category!
audit script error
award.project!
AMP
biosample_type!
cell line
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
367 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
WGBS
snATAC-seq
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
primary cell
Langerhans cell
85
21
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
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tissue
kidney
47
lung
9
10
islet of Langerhans
2
2
stem cell
SB Ad3.1
1
1
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