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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
single cell RNA-seq
99
total RNA-seq
88
ChIP-seq
28
snATAC-seq
21
ATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
211
Transcription
88
DNA binding
49
DNA accessibility
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
May, 2022
102
May, 2021
99
February, 2023
59
September, 2020
47
September, 2023
19
April, 2020
16
January, 2021
12
February, 2021
7
August, 2020
5
March, 2020
5
March, 2023
Available data
196
bigWig
186
bam
142
fastq
tsv
88
bed narrowPeak
84
tagAlign
19
zippedFastqFolder
1
hic
Organism
366
Homo sapiens
Biosample type
263
primary cell
97
tissue
9
cell line
2
stem cell
Organ
95
pancreas
65
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
154
HPAP
146
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
99
GRCh38
88
hg19
Lab
154
Klaus Kaestner, Upenn
140
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
6
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
3
inconsistent ontology term
audit.ERROR.category!
audit script error
award.project!
AMP
files.file_type!
tsv
month_released!
May, 2022
organ_slims!
gonad
BIOSAMPLE
ASSAY
371 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
84
1
Langerhans cell
52
pancreatic alpha cell
42
7
exocrine cell
39
pancreatic beta cell
11
3
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tissue
kidney
47
islet of Langerhans
7
2
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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